Publications

Publications that acknowledge VIB Nucleomics Core, formerly known as VIB MicroArray Facility.

 

2014

  • Boumahdi S, Driessens G, Lapouge G, Rorive S, Nassar D, Le Mercier M, Delatte B, Caauwe A, Lenglez S, Nkusi E, Brohée S, Salmon I, Dubois C, del Marmol V, Fuks F, Beck B and Blanpain C. (2014) SOX2 controls tumour initiation and cancer stem-cell functions in squamous-cell carcinoma. Nature, 511: 246-250.
  • Couceiro JR, Gallardo R, De Smet F, De Baets G, Baatsen P, Annaert W, Roose K, Saelens X, Schymkowitz J and Rousseau F. (2014) Sequence-dependent internalisation of aggregating peptides. Journal of Biological Chemistry, November 12.
  • Cox-Limpens KEM, Vles JSH, van den Hove DLA, Zimmermann LJI and Gavilanes AWD. (2014) Fetal asphyctic preconditioning alters the transcriptional response to perinatal asphyxia. BMC Neuroscience, 15:67.
  • Dekervel J, Hompes D, van Malenstein H, Popovic D, Sagaert X, De Moor B, Van Cutsem E, D’hoore A, Verslype C, van Pelt J. (2014) Hypoxia driven gene expression is an independent prognostic factor in stage II and III colon cancer patients. Clinical Cancer Research, January 31. PubMed: 24486594
  • De Wilde B, Lefever S, Dong W, Dunne J, Husain S, Derveaux S, Hellemans J and Vandesompele J. (2014) Target enrichment using parallel nanoliter quantitative PCR amplification. BMC Genomics, 15: 184.
  • Dingemans J, Ye L, Hildebrand F, Tontodonati F, Craggs M, Bilocq F, De Vos D, Crabbé A, Van Houdt R, Malfroot A and Cornelis P. (2014) The deletion of TonB-dependent receptor genes is part of the genome reduction process that occurs during adaptation of Pseudomonas aeruginosa to the cystic fibrosis lung. Pathogens and Disease, April 16.
  • França-Costa J, Van Weyenbergh J, Boaventura VS, Luza NF, Malta-Santosa H, Oliveira MCS, Santos de Campos DC, Saldanha AC, dos-Santos WLC, Bozza PT, Barral-Netto M, Barral A, Costa JM and Borges VM.(2014) Arginase I, Polyamine and Prostaglandin E2 Pathways Suppress the Inflammatory Response and Contribute to Diffuse Cutaneous Leishmaniasis. Journal of Infectious Diseases, August 14.
  • Jacobs K, Mertzanidou A, Geens M, Nguyen HT, Staessen C & Spits C. (2014) Low-grade chromosomal mosaicism in human somatic and embryonic stem cell populations. Nature Communications, June 27.
  • Juchtmans N, Dhollander AAM, Coudenys J, Audenaert EA, Pattyn C, Lambrecht S and Elewaut D.(2014) Distinct dysregulation of the small leucine‐rich repeat protein (SLRP) family in osteoarthritic labrum compared to articular cartilage. Arthritis & Rheumatology.
  • Kerchev P, Muhlenbock P, Denecker J, Morreel K, Hoeberichts FA, Van der Kelen K, Vandorpe M, Nguyen L, Audenaert D and Van Breusegem F.(2014) Activation of auxin signalling counteracts photorespiratory H2O2‐dependent cell death. Plant, Cell and Environment, January 13.
  • Lin YC, Boone M, Meuris L, Lemmens I, Van Roy N, Soete A, Reumers J, Moisse M, Plaisance S, Drmanac R, Chen J, Speleman F, Lambrechts D, Van de Peer Y, Tavernier J & Callewaert N. (2014) Genome dynamics of the human embryonic kidney 293 lineage in response to cell biology manipulations. Nature Communications, September 3.
  • Osorio F et al. (2014) The unfolded-protein-response sensor IRE-1α regulates the function of CD8α+ dendritic cells. Nature Immunology, 15: 248-257.
  • Peeters A et al. (2014) Mitochondria in peroxisome-deficient hepatocytes exhibit impaired respiration, depleted DNA, and PGC-1α independent proliferation. BBA – Molecular Cell Research, November 20.
  • Schnaubel D et al. (2014) Low glutathione regulates gene expression and the redox potentials of the nucleus and cytosol in Arabidopsis thaliana. Plant, Cell & Environment, January 13.
  • Schulz P, Jansseune K, Degenkolbe T, Méret M, Claeys H, Skirycz A, Teige M, Willmitzer L, Hannah MA. (2014) Poly(ADP-Ribose)Polymerase Activity Controls Plant Growth by Promoting Leaf Cell Number. Plos One, February 28.
  • Sewelama N, Jasperta N, Van Der Kelen K, Tognetti VB, Schmitz J, Frerigmann H, Stahl E, Zeier J, Van Breusegem F and Maurino VG. (2014) Spatial H2O2 Signalling Specificity: H2O2 from Chloroplasts and Peroxisomes Modulates the Plant Transcriptome Differentially. Molecular Plant, June 7.
  • Strazisar M, Cammaerts S, van der Ven K, Forero DA, Lenaerts A-S, Nordin A, Almeida-Souza L, Genovese G, Timmerman V, Liekens A, De Rijk P, Adolfsson R, Callaerts P and Del-Favero J. (2014) MIR137 variants identified in psychiatric patients affect synaptogenesis and neuronal transmission gene sets. Molecular Psychiatry, June 3.
  • Tran HT, Van den Bergh R, Vu TN, Laukens K, Worodria W, Loembé MM, Colebunders R, Kestens L, De Baetselier P, Raes G. (2014). The role of monocytes in the development of Tuberculosis-associated Immune Reconstitution Inflammatory Syndrome. Immunobiology, 219(1):37-44. PubMed:23958034
  • Vanholme B et al. (2014) Accumulation of N-Acetylglucosamine Oligomers in the Plant Cell Wall Affects Plant Architecture in a Dose-Dependent and Conditional Manner. Plant Physiology, 165 (1): 290-308.
  • Van Loy T, Thys K, Ryschkewitsch C, Lagatie O, Monaco MC, Major EO, Tritsmans L and Stuyver LJ. (2014) JC virus quasispecies analysis reveals complex viral population underlying PML and supports viral dissemination via the hematogenous route. Journal of Virology, November 12.
  • Vercruyssen L, Verkest A, Gonzalez N, Heyndrickx KS, Eeckhout D, Han SK, Jégu T, Archacki R, Van Leene J, Andriankaja M, De Bodt S, Abeel T, Coppens F, Dhondt S, De Milde L, Vermeersch M, Maleux K, Gevaert K, Jerzmanowski A, Moussa B, Wagner D, Vandepoele K, De Jaeger G, Inzé D (2014). ANGUSTIFOLIA3 Binds to SWI/SNF Chromatin Remodeling Complexes to Regulate Transcription during Arabidopsis Leaf Development. The Plant Cell, 26(1):210-29. PubMed: 24443518
  • Ye L, Hildebrand F, Dingemans J, Ballet S, Laus G, Matthijs S, Berendsen R, Cornelis P. (2014) Draft Genome Sequence Analysis of a Pseudomonas putida W15Oct28 Strain with Antagonistic Activity to Gram-Positive and Pseudomonas sp. Pathogens. Plos One, November 4.
  • Yia D, Kameia CLA, Coolsa T, Vanderauwera S, Takahashi N, Okushima Y, Eekhout T, Yoshiyama KO, Larkin J, Van den Daele H, Conklin P, Britt A, Umeda M and De Veylder L (2014). The Arabidopsis SIAMESE-RELATED Cyclin-Dependent Kinase Inhibitors SMR5 and SMR7 Regulate the DNA Damage Checkpoint in Response to Reactive Oxygen Species. The Plant Cell, 26(1):296-309.PubMed: 24399300

 

Yearly overview

2013

  • Aranguren XL, Agirre X, Beerens M, Coppiello G, Uriz M, Vandersmissen I, Benkheil M, Panadero J, Aguado N, Pascual-Montano A, Segura V, Prósper F, Luttun A (2013). Unraveling a novel transcription factor code determining the human arterial-specific endothelial cell signature. Blood, 2013 Oct 15.
  • Besouw M, van den Heuvel L, van Eijsden R, Bongaers I, Kluijtmans L, Dewerchin M, Levtchenko E (2013). Increased human dermal microvascular endothelial cell survival induced by cysteamine. J. Inherit. Metab. Dis., 36, 6:1073-7.
  • De Coninck B, Carron D, Tavormina P, Willem L, Craik DJ, Vos C, Thevissen K, Mathys J, Cammue BP (2013). Mining the genome of Arabidopsis thaliana as a basis for the identification of novel bioactive peptides involved in oxidative stress tolerance. J. Exp. Bot., 2013 Sep 16.
  • De Cremer K, Mathys J, Vos C, Froenicke L, Michelmore RW, Cammue BP, De Coninck B (2013). RNAseq-based transcriptome analysis of Lactuca sativa infected by the fungal necrotroph Botrytis cinerea. Plant Cell Environ., 36, 11:1992-2007. PubMed:23534608
  • De Schutter T, Andrei G, Topalis D, Naesens L, Snoeck R (2013). Cidofovir selectivity is based on the different response of normal and cancer cells to DNA damage. BMC Med Genomics, 6:18.
  • De Wilde K, De Buck S, Vanneste K, Depicker A (2013). Recombinant antibody production in Arabidopsis seeds triggers an unfolded protein response. Plant Physiol., 161, 2:1021-33.
  • Driesen RB, Nagaraju CK, Abi-Char J, Coenen T, Lijnen PJ, Fagard RH, Sipido KR, Petrov VV (2013).  Reversible and irreversible differentiation of cardiac fibroblasts.  Cardiovasc Res. Dec 23  PubMed:24368833
  • Dubois M, Skirycz A, Claeys H, Maleux K, Dhondt S, De Bodt S, Vanden Bossche R, De Milde L, Yoshizumi T, Matsui M, Inzé D (2013). Ethylene Response Factor6 acts as a central regulator of leaf growth under water-limiting conditions in Arabidopsis. Plant Physiol., 162, 1:319-32.
  • Heindryckx F, Coulon S, Terrie E, Casteleyn C, Stassen JM, Geerts A, Libbrecht L, Allemeersch J, Carmeliet P, Colle I, Van Vlierberghe H (2013). The placental growth factor as a target against hepatocellular carcinoma in a diethylnitrosamine-induced mouse model. J. Hepatol., 58, 2:319-28.
  • Hildebrand F, Nguyen TL, Brinkman B, Yunta RG, Cauwe B, Vandenabeele P, Liston A, Raes J (2013). Inflammation-associated enterotypes, host genotype, cage and inter-individual effects drive gut microbiota variation in common laboratory mice. Genome Biol., 14, 1:R4. PubMed:23347395
  • Huysman MJ, Fortunato AE, Matthijs M, Costa BS, Vanderhaeghen R, Van den Daele H, Sachse M, Inzé D, Bowler C, Kroth PG, Wilhelm C, Falciatore A, Vyverman W, De Veylder L (2013). AUREOCHROME1a-mediated induction of the diatom-specific cyclin dsCYC2 controls the onset of cell division in diatoms (Phaeodactylum tricornutum). Plant Cell, 25, 1:215-28. PubMed:23292736
  • Illeghems K, De Vuyst L, Weckx S (2013). Complete genome sequence and comparative analysis of Acetobacter pasteurianus 386B, a strain well-adapted to the cocoa bean fermentation ecosystem. BMC Genomics, 14:526.
  • Lau P, Bossers K, Janky R, Salta E, Frigerio CS, Barbash S, Rothman R, Sierksma AS, Thathiah A, Greenberg D, Papadopoulou AS, Achsel T, Ayoubi T, Soreq H, Verhaagen J, Swaab DF, Aerts S, De Strooper B (2013). Alteration of the microRNA network during the progression of Alzheimer’s disease. EMBO Mol Med, 5, 10:1613-34. PubMed:24014289
  • Lombaert N, Castrucci E, Decordier I, Van Hummelen P, Kirsch-Volders M, Cundari E, Lison D (2013). Hard-metal (WC-Co) particles trigger a signaling cascade involving p38 MAPK, HIF-1α, HMOX1, and p53 activation in human PBMC. Arch. Toxicol., 87, 2:259-68.
  • Martínez-Montañés F, Rienzo A, Poveda-Huertes D, Pascual-Ahuir A, Proft M (2013). Activator and repressor functions of the Mot3 transcription factor in the osmostress response of Saccharomyces cerevisiae. Eukaryotic Cell, 12, 5:636-47.
  • Schroyen M, Goddeeris BM, Stinckens A, Verhelst R, Janssens S, Cox E, Georges M, Niewold T, Buys N (2013). The effect of enterotoxigenic Escherichia coli F4ab,ac on early-weaned piglets: a gene expression study. Vet. Immunol. Immunopathol., 152, 1-2:87-92.
  • Snauwaert S, Verstichel G, Bonte S, Goetgeluk G, Vanhee S, Van Caeneghem Y, De Mulder K, Heirman C, Stauss H, Heemskerk MH, Taghon T, Leclercq G, Plum J, Langerak AW, Thielemans K, Kerre T, Vandekerckhove B (2013). In vitro generation of mature, naive antigen-specific CD8(+) T cells with a single T-cell receptor by agonist selection. Leukemia, 2013 Oct 4. doi: 10.1038/leu.2013.285.
  • Van den Broeck A, Vankelecom H, Van Delm W, Gremeaux L, Wouters J, Allemeersch J, Govaere O, Roskams T, Topal B (2013). Human pancreatic cancer contains a side population expressing cancer stem cell-associated and prognostic genes. PLoS ONE, 8, 9:e73968. PubMed:24069258
  • Vanmarsenille L, Verbeeck J, Belet S, Roebroek AJ, Van de Putte T, Nevelsteen J, Callaerts-Vegh Z, D’Hooge R, Marynen P, Froyen G (2013). Generation and characterization of an Nxf7 knockout mouse to study NXF5 deficiency in a patient with intellectual disability. PLoS ONE, 8, 5:e64144.
  • Van Loy T, Thys K, Tritsmans L, Stuyver LJ (2013). Quasispecies analysis of JC virus DNA present in urine of healthy subjects. PLoS ONE, 8, 8:e70950. PubMed:23967139
  • Verelst W, Bertolini E, De Bodt S, Vandepoele K, Demeulenaere M, Pè ME, Inzé D (2013). Molecular and physiological analysis of growth-limiting drought stress in Brachypodium distachyon leaves. Mol Plant, 6, 2:311-22.
  • Wituszynska W, Galazka K, Rusaczonek A, Vanderauwera S, Van Breusegem F, Karpinski S (2013). Multivariable environmental conditions promote photosynthetic adaptation potential in Arabidopsis thaliana. J. Plant Physiol., 170, 6:548-59.
  • Wituszynska W, Slesak I, Vanderauwera S, Szechynska-Hebda M, Kornas A, Van Der Kelen K, Mühlenbock P, Karpinska B, Mackowski S, Van Breusegem F, Karpinski S (2013). Lesion simulating disease1, enhanced disease susceptibility1, and phytoalexin deficient4 conditionally regulate cellular signaling homeostasis, photosynthesis, water use efficiency, and seed yield in Arabidopsis. Plant Physiol., 161, 4:1795-805.
  • Wouters J, Stas M, Gremeaux L, Govaere O, Van den Broeck A, Maes H, Agostinis P, Roskams T, van den Oord JJ, Vankelecom H (2013). The human melanoma side population displays molecular and functional characteristics of enriched chemoresistance and tumorigenesis. PLoS ONE, 8, 10:e76550.
  • Ye L, Ballet S, Hildebrand F, Laus G, Guillemyn K, Raes J, Matthijs S, Martins J, Cornelis P (2013). A combinatorial approach to the structure elucidation of a pyoverdine siderophore produced by a Pseudomonas putida isolate and the use of pyoverdine as a taxonomic marker for typing P. putida subspecies. Biometals, 26, 4:561-75.

2012

  • Fassbender A, Verbeeck N, Börnigen D, Kyama CM, Bokor A, Vodolazkaia A, Peeraer K, Tomassetti C, Meuleman C, Gevaert O, Van de Plas R, Ojeda F, De Moor B, Moreau Y, Waelkens E, D’Hooghe TM (2012). Combined mRNA microarray and proteomic analysis of eutopic endometrium of women with and without endometriosis. Hum. Reprod., 27, 7:2020-9.
  • Gremeaux L, Fu Q, Chen J, Vankelecom H (2012). Activated phenotype of the pituitary stem/progenitor cell compartment during the early-postnatal maturation phase of the gland. Stem Cells Dev., 21, 5:801-13.
  • Himanen K, Woloszynska M, Boccardi TM, De Groeve S, Nelissen H, Bruno L, Vuylsteke M, Van Lijsebettens M (2012). Histone H2B monoubiquitination is required to reach maximal transcript levels of circadian clock genes in Arabidopsis. Plant J., 72, 2:249-60.
  • Illeghems K, De Vuyst L, Papalexandratou Z, Weckx S (2012). Phylogenetic analysis of a spontaneous cocoa bean fermentation metagenome reveals new insights into its bacterial and fungal community diversity. PLoS ONE, 7, 5:e38040. PubMed:22666442
  • Konings P, Vanneste E, Jackmaert S, Ampe M, Verbeke G, Moreau Y, Vermeesch JR, Voet T (2012). Microarray analysis of copy number variation in single cells. Nat Protoc, 7, 2:281-310.
  • Lehman HL, Van Laere SJ, van Golen CM, Vermeulen PB, Dirix LY, van Golen KL (2012). Regulation of inflammatory breast cancer cell invasion through Akt1/PKBα phosphorylation of RhoC GTPase. Mol. Cancer Res., 10, 10:1306-18.
  • Lodewyckx L, Cailotto F, Thysen S, Luyten FP, Lories RJ (2012). Tight regulation of wingless-type signaling in the articular cartilage – subchondral bone biomechanical unit: transcriptomics in Frzb-knockout mice. Arthritis Res. Ther., 14, 1:R16.
  • Lo Nigro A, Geraerts M, Notelaers T, Roobrouck VD, Muijtjens M, Eggermont K, Subramanian K, Ulloa-Montoya F, Park Y, Owens J, Burns TC, Low W, Sharma S, Sohni A, Crabbe A, Pauwelyn K, Roelandt P, Agirre X, Prosper F, O’Brien TD, Zwijsen A, Hu WS, Binas B, Verfaillie CM (2012). MAPC culture conditions support the derivation of cells with nascent hypoblast features from bone marrow and blastocysts. J Mol Cell Biol, 4, 6:423-6.
  • Moens B, Decanine D, Menezes SM, Khouri R, Silva-Santos G, Lopez G, Alvarez C, Talledo M, Gotuzzo E, de Almeida Kruschewsky R, Galvão-Castro B, Vandamme AM, Van Weyenbergh J (2012). Ascorbic acid has superior ex vivo antiproliferative, cell death-inducing and immunomodulatory effects over IFN-β in HTLV-1-associated myelopathy. PLoS Negl Trop Dis, 6, 7:e1729.
  • Moens B, Pannecouque C, López G, Talledo M, Gotuzzo E, Khouri R, Bittencourt A, Farré L, Galvão-Castro B, Vandamme AM, Van Weyenbergh J (2012). Simultaneous RNA quantification of human and retroviral genomes reveals intact interferon signaling in HTLV-1-infected CD4+ T cell lines. Virol. J., 9:171.
  • Queval G, Foyer CH (2012). Redox regulation of photosynthetic gene expression. Philos. Trans. R. Soc. Lond., B, Biol. Sci., 367, 1608:3475-85.
  • Queval G, Neukermans J, Vanderauwera S, Van Breusegem F, Noctor G (2012). Day length is a key regulator of transcriptomic responses to both CO(2) and H(2)O(2) in Arabidopsis. Plant Cell Environ., 35, 2:374-87.
  • Satre V, Siu V, Marynen P (2012). Copy-number gains of HUWE1 due to replication- and recombination-based rearrangements. Am. J. Hum. Genet., 91, 2:252-64.
  • Schulz P, Neukermans J, Van der Kelen K, Mühlenbock P, Van Breusegem F, Noctor G, Teige M, Metzlaff M, Hannah MA (2012). Chemical PARP inhibition enhances growth of Arabidopsis and reduces anthocyanin accumulation and the activation of stress protective mechanisms. PLoS ONE, 7, 5:e37287.
  • Sergeant G, van Eijsden R, Roskams T, Van Duppen V, Topal B (2012). Pancreatic cancer circulating tumour cells express a cell motility gene signature that predicts survival after surgery. BMC Cancer, 12:527.
  • Vanholme R, Storme V, Vanholme B, Sundin L, Christensen JH, Goeminne G, Halpin C, Rohde A, Morreel K, Boerjan W (2012). A systems biology view of responses to lignin biosynthesis perturbations in Arabidopsis. Plant Cell, 24, 9:3506-29.
  • van Malenstein H, Verslype C, Windmolders P, van Eijsden R, Nevens F, van Pelt J (2012). Characterization of a cell culture model for clinically aggressive hepatocellular carcinoma induced by chronic hypoxia. Cancer Lett., 315, 2:178-88.
  • Wouters J, Stas M, Govaere O, Van den Eynde K, Vankelecom H, van den Oord JJ (2012). Gene expression changes in melanoma metastases in response to high-dose chemotherapy during isolated limb perfusion. Pigment Cell Melanoma Res, 25, 4:454-65.

2011

  • Beck B, Driessens G, Goossens S, Youssef KK, Kuchnio A, Caauwe A, Sotiropoulou PA, Loges S, Lapouge G, Candi A, Mascre G, Drogat B, Dekoninck S, Haigh JJ, Carmeliet P, Blanpain C (2011). A vascular niche and a VEGF-Nrp1 loop regulate the initiation and stemness of skin tumours. Nature, 478, 7369:399-403. PubMed:22012397
  • Boonefaes T, Houthuys E, Van den Bergh R, Vander Beken S, Raes G, Brouckaert P, De Baetselier P, Grooten J (2011). Do-it-yourself: construction of a custom cDNA macroarray platform with high sensitivity and linear range. BMC Biotechnol., 11:97.
  • Bruyère C, Mijatovic T, Lonez C, Spiegl-Kreinecker S, Berger W, Kast RE, Ruysschaert JM, Kiss R, Lefranc F (2011). Temozolomide-induced modification of the CXC chemokine network in experimental gliomas. Int. J. Oncol., 38, 5:1453-64.
  • Cardoen D, Wenseleers T, Ernst UR, Danneels EL, Laget D, De Graaf DC, Schoofs L, Verleyen P (2011). Genome-wide analysis of alternative reproductive phenotypes in honeybee workers. Mol. Ecol., 20, 19:4070-84.
  • Cools T, Iantcheva A, Weimer AK, Boens S, Takahashi N, Maes S, Van den Daele H, Van Isterdael G, Schnittger A, De Veylder L (2011). The Arabidopsis thaliana checkpoint kinase WEE1 protects against premature vascular differentiation during replication stress. Plant Cell, 23, 4:1435-48.
  • Migliorini D, Bogaerts S, Defever D, Vyas R, Denecker G, Radaelli E, Zwolinska A, Depaepe V, Hochepied T, Skarnes WC, Marine JC (2011). Cop1 constitutively regulates c-Jun protein stability and functions as a tumor suppressor in mice. J. Clin. Invest., 121, 4:1329-43.
  • Morker KH, Roberts MR (2011). Light exerts multiple levels of influence on the Arabidopsis wound response. Plant Cell Environ., 34, 5:717-28.
  • Rae L, Lao NT, Kavanagh TA (2011). Regulation of multiple aquaporin genes in Arabidopsis by a pair of recently duplicated DREB transcription factors. Planta, 234, 3:429-44.
  • Skirycz A, Claeys H, De Bodt S, Oikawa A, Shinoda S, Andriankaja M, Maleux K, Eloy NB, Coppens F, Yoo SD, Saito K, Inzé D (2011). Pause-and-stop: the effects of osmotic stress on cell proliferation during early leaf development in Arabidopsis and a role for ethylene signaling in cell cycle arrest. Plant Cell, 23, 5:1876-88. PubMed:21558544
  • Smeets A, Daemen A, Vanden Bempt I, Gevaert O, Claes B, Wildiers H, Drijkoningen R, Van Hummelen P, Lambrechts D, De Moor B, Neven P, Sotiriou C, Vandorpe T, Paridaens R, Christiaens MR (2011). Prediction of lymph node involvement in breast cancer from primary tumor tissue using gene expression profiling and miRNAs. Breast Cancer Res. Treat., 129, 3:767-76.
  • Van Assche T, Hendrickx J, Crauwels HM, Guns PJ, Martinet W, Fransen P, Raes M, Bult H (2011). Transcription profiles of aortic smooth muscle cells from atherosclerosis-prone and -resistant regions in young apolipoprotein E-deficient mice before plaque development. J. Vasc. Res., 48, 1:31-42.
  • Van Mulders SE, Stassen C, Daenen L, Devreese B, Siewers V, van Eijsden RG, Nielsen J, Delvaux FR, Willaert R (2011). The influence of microgravity on invasive growth in Saccharomyces cerevisiae. Astrobiology, 11, 1:45-55.
  • Vrancken G, De Vuyst L, Rimaux T, Allemeersch J, Weckx S (2011). Adaptation of Lactobacillus plantarum IMDO 130201, a wheat sourdough isolate, to growth in wheat sourdough simulation medium at different pH values through differential gene expression. Appl. Environ. Microbiol., 77, 10:3406-12.
  • Weckx S, Allemeersch J, Van der Meulen R, Vrancken G, Huys G, Vandamme P, Van Hummelen P, De Vuyst L (2011). Metatranscriptome analysis for insight into whole-ecosystem gene expression during spontaneous wheat and spelt sourdough fermentations. Appl. Environ. Microbiol., 77, 2:618-26.

2010

  • Ahn JW, Mann K, Walsh S, Shehab M, Hoang S, Docherty Z, Mohammed S, Mackie Ogilvie C (2010). Validation and implementation of array comparative genomic hybridisation as a first line test in place of postnatal karyotyping for genome imbalance. Mol Cytogenet, 3:9.
  • Cools T, Iantcheva A, Maes S, Van den Daele H, De Veylder L (2010). A replication stress-induced synchronization method for Arabidopsis thaliana root meristems. Plant J., 64, 4:705-14.
  • Crul T, Testelmans D, Spruit MA, Troosters T, Gosselink R, Geeraerts I, Decramer M, Gayan-Ramirez G (2010). Gene expression profiling in vastus lateralis muscle during an acute exacerbation of COPD. Cell. Physiol. Biochem., 25, 4-5:491-500.
  • de Melo HF, Bonini BM, Thevelein J, Simões DA, Morais MA (2010). Physiological and molecular analysis of the stress response of Saccharomyces cerevisiae imposed by strong inorganic acid with implication to industrial fermentations. J. Appl. Microbiol., 109, 1:116-27.
  • Dhondt S, Coppens F, De Winter F, Swarup K, Merks RM, Inzé D, Bennett MJ, Beemster GT (2010). SHORT-ROOT and SCARECROW regulate leaf growth in Arabidopsis by stimulating S-phase progression of the cell cycle. Plant Physiol., 154, 3:1183-95.
  • Fortin S, Le Mercier M, Camby I, Spiegl-Kreinecker S, Berger W, Lefranc F, Kiss R (2010). Galectin-1 is implicated in the protein kinase C epsilon/vimentin-controlled trafficking of integrin-beta1 in glioblastoma cells. Brain Pathol., 20, 1:39-49.
  • Froyen G, Belet S, Martinez F, Santos-Rebouças CB, Declercq M, Verbeeck J, Donckers L, Berland S, Mayo S, Rosello M, Pimentel MM, Fintelman-Rodrigues N, Hovland R, Rodrigues dos Santos S, Raymond FL, Bose T, Corbett MA, Sheffield L, van Ravenswaaij-Arts CM, Dijkhuizen T, Coutton C, Hermans C, Vuylsteke M, Coppens F, Craciun A, Inzé D, Verbruggen N (2010). Early transcriptomic changes induced by magnesium deficiency in Arabidopsis thaliana reveal the alteration of circadian clock gene expression in roots and the triggering of abscisic acid-responsive genes. New Phytol., 187, 1:119-31.
  • Geens MM, Niewold TA (2010). Preliminary Characterization of the Transcriptional Response of the Porcine Intestinal Cell Line IPEC-J2 to Enterotoxigenic Escherichia coli, Escherichia coli, and E. coli Lipopolysaccharide. Comp. Funct. Genomics, 2010:469583.
  • Hannes F, Drozniewska M, Vermeesch JR, Haus O (2010). Duplication of the Wolf-Hirschhorn syndrome critical region causes neurodevelopmental delay. Eur J Med Genet, 53, 3:136-40.
  • Hermans C, Vuylsteke M, Coppens F, Cristescu SM, Harren FJ, Inzé D, Verbruggen N (2010). Systems analysis of the responses to long-term magnesium deficiency and restoration in Arabidopsis thaliana. New Phytol., 187, 1:132-44.
  • Jacobs K, Van Gele M, Forsyth R, Brochez L, Vanhoecke B, De Wever O, Bracke M (2010). P-cadherin counteracts myosin II-B function: implications in melanoma progression. Mol. Cancer, 9:255.
  • Janssens S, Denayer T, Deroo T, Van Roy F, Vleminckx K (2010). Direct control of Hoxd1 and Irx3 expression by Wnt/beta-catenin signaling during anteroposterior patterning of the neural axis in Xenopus. Int. J. Dev. Biol., 54, 10:1435-42.
  • Le Calvé B, Rynkowski M, Le Mercier M, Bruyère C, Lonez C, Gras T, Haibe-Kains B, Bontempi G, Decaestecker C, Ruysschaert JM, Kiss R, Lefranc F (2010). Long-term in vitro treatment of human glioblastoma cells with temozolomide increases resistance in vivo through up-regulation of GLUT transporter and aldo-keto reductase enzyme AKR1C expression. Neoplasia, 12, 9:727-39.
  • Marshall AK, Barrett OP, Cullingford TE, Shanmugasundram A, Sugden PH, Clerk A (2010). ERK1/2 signaling dominates over RhoA signaling in regulating early changes in RNA expression induced by endothelin-1 in neonatal rat cardiomyocytes. PLoS ONE, 5, 4:e10027.
  • Mateizel I, Spits C, De Rycke M, Liebaers I, Sermon K (2010). Derivation, culture, and characterization of VUB hESC lines. In Vitro Cell. Dev. Biol. Anim., 46, 3-4:300-8.
  • Takahashi N, Quimbaya M, Schubert V, Lammens T, Vandepoele K, Schubert I, Matsui M, Inzé D, Berx G, De Veylder L (2010). The MCM-binding protein ETG1 aids sister chromatid cohesion required for postreplicative homologous recombination repair. PLoS Genet., 6, 1:e1000817.
  • Tognetti VB, Van Aken O, Morreel K, Vandenbroucke K, van de Cotte B, De Clercq I, Chiwocha S, Fenske R, Prinsen E, Boerjan W, Genty B, Stubbs KA, Inzé D, Van Breusegem F (2010). Perturbation of indole-3-butyric acid homeostasis by the UDP-glucosyltransferase UGT74E2 modulates Arabidopsis architecture and water stress tolerance. Plant Cell, 22, 8:2660-79.
  • Van den Bergh R, Florence E, Vlieghe E, Boonefaes T, Grooten J, Houthuys E, Tran HT, Gali Y, De Baetselier P, Vanham G, Raes G (2010). Transcriptome analysis of monocyte-HIV interactions. Retrovirology, 7:53.
  • Van Dessel, N, Beke, L, Görnemann, J, Minnebo, N, Beullens, M, Tanuma, N, Shima, H, Van Eynde, A, Bollen, M (2010). The phosphatase interactor NIPP1 regulates the occupancy of the histone methyltransferase EZH2 at Polycomb targets. Nucleic Acids Res., 38, 21:7500-12.
  • van Malenstein H, Gevaert O, Libbrecht L, Daemen A, Allemeersch J, Nevens F, Van Cutsem E, Cassiman D, De Moor B, Verslype C, van Pelt J (2010). A seven-gene set associated with chronic hypoxia of prognostic importance in hepatocellular carcinoma. Clin. Cancer Res., 16, 16:4278-88.
  • Van Minnebruggen A, Neyt P, De Groeve S, Coussens G, Ponce MR, Micol JL, Van Lijsebettens M (2010). The ang3 mutation identified the ribosomal protein gene RPL5B with a role in cell expansion during organ growth. Physiol Plant, 138, 1:91-101.
  • Weckx S, Van der Meulen R, Allemeersch J, Huys G, Vandamme P, Van Hummelen P, De Vuyst L (2010). Community dynamics of bacteria in sourdough fermentations as revealed by their metatranscriptome. Appl. Environ. Microbiol., 76, 16:5402-8.
  • Willems A, De Gendt K, Allemeersch J, Smith LB, Welsh M, Swinnen JV, Verhoeven G (2010). Early effects of Sertoli cell-selective androgen receptor ablation on testicular gene expression. Int. J. Androl., 33, 3:507-17.
  • You SH, Liao X, Weiss RE, Lazar MA (2010). The interaction between nuclear receptor corepressor and histone deacetylase 3 regulates both positive and negative thyroid hormone action in vivo. Mol. Endocrinol., 24, 7:1359-67.

2009

  • Aerts AM, Zabrocki P, Govaert G, Mathys J, Carmona-Gutierrez D, Madeo F, Winderickx J, Cammue BP, Thevissen K (2009). Mitochondrial dysfunction leads to reduced chronological lifespan and increased apoptosis in yeast. FEBS Lett., 583, 1:113-7.
  • Allemeersch J, Van Vooren S, Hannes F, De Moor B, Vermeesch JR, Moreau Y (2009). An experimental loop design for the detection of constitutional chromosomal aberrations by array CGH. BMC Bioinformatics, 10:380.
  • Daemen A, Gevaert O, Leunen K, Legius E, Vergote I, De Moor B (2009). Supervised classification of array CGH data with HMM-based feature selection. Pac Symp Biocomput, 14:468-79.
  • Ferrantini A, Allemeersch J, Van Hummelen P, Carlon E (2009). Thermodynamic scaling behavior in genechips. BMC Bioinformatics, 10:3.
  • Grasser M, Kane CM, Merkle T, Melzer M, Emmersen J, Grasser KD (2009). Transcript elongation factor TFIIS is involved in arabidopsis seed dormancy. J. Mol. Biol., 386, 3:598-611.
  • Grisart B, Willatt L, Destrée A, Fryns JP, Rack K, de Ravel T, Rosenfeld J, Vermeesch JR, Verellen-Dumoulin C, Sandford R (2009). 17q21.31 microduplication patients are characterised by behavioural problems and poor social interaction. J. Med. Genet., 46, 8:524-30.
  • Hannes FD, Sharp AJ, Mefford HC, de Ravel T, Ruivenkamp CA, Breuning MH, Fryns JP, Devriendt K, Van Buggenhout G, Vogels A, Stewart H, Hennekam RC, Cooper GM, Regan R, Knight SJ, Eichler EE, Vermeesch JR (2009). Recurrent reciprocal deletions and duplications of 16p13.11: the deletion is a risk factor for MR/MCA while the duplication may be a rare benign variant. J. Med. Genet., 46, 4:223-32.
  • Le Mercier M, Fortin S, Mathieu V, Roland I, Spiegl-Kreinecker S, Haibe-Kains B, Bontempi G, Decaestecker C, Berger W, Lefranc F, Kiss R (2009). Galectin 1 proangiogenic and promigratory effects in the Hs683 oligodendroglioma model are partly mediated through the control of BEX2 expression. Neoplasia, 11, 5:485-96.
  • Mateizel I, Spits C, Verloes A, Mertzanidou A, Liebaers I, Sermon K (2009). Characterization of CD30 expression in human embryonic stem cell lines cultured in serum-free media and passaged mechanically. Hum. Reprod., 24, 10:2477-89.
  • Naouar N, Vandepoele K, Lammens T, Casneuf T, Zeller G, van Hummelen P, Weigel D, Rätsch G, Inzé D, Kuiper M, De Veylder L, Vuylsteke M (2009). Quantitative RNA expression analysis with Affymetrix Tiling 1.0R arrays identifies new E2F target genes. Plant J., 57, 1:184-94.
  • Pereson S, Wils H, Kleinberger G, McGowan E, Vandewoestyne M, Van Broeck B, Joris G, Cuijt I, Deforce D, Hutton M, Van Broeckhoven C, Kumar-Singh S (2009). Progranulin expression correlates with dense-core amyloid plaque burden in Alzheimer disease mouse models. J. Pathol., 219, 2:173-81.
  • Vandewalle J, Van Esch H, Govaerts K, Verbeeck J, Zweier C, Madrigal I, Mila M, Pijkels E, Fernandez I, Kohlhase J, Spaich C, Rauch A, Fryns JP, Marynen P, Froyen G (2009). Dosage-dependent severity of the phenotype in patients with mental retardation due to a recurrent copy-number gain at Xq28 mediated by an unusual recombination. Am. J. Hum. Genet., 85, 6:809-22.
  • Vanoirbeek E, Eelen G, Verlinden L, Marchal K, Engelen K, De Moor B, Beullens I, Marcelis S, De Clercq P, Bouillon R, Verstuyf A (2009). Microarray analysis of MCF-7 breast cancer cells treated with 1,25-dihydroxyvitamin D3 or a 17-methyl-D-ring analog. Anticancer Res., 29, 9:3585-90.
  • Weckx S, Allemeersch J, Van der Meulen R, Vrancken G, Huys G, Vandamme P, Van Hummelen P, De Vuyst L (2009). Development and validation of a species-independent functional gene microarray that targets lactic acid bacteria. Appl. Environ. Microbiol., 75, 20:6488-95.
  • Zollino M, Seminara L, Orteschi D, Gobbi G, Giovannini S, Della Giustina E, Frattini D, Scarano A, Neri G (2009). The ring 14 syndrome: clinical and molecular definition. Am. J. Med. Genet. A, 149A, 6:1116-24.

Popups Powered By : XYZScripts.com